chr15:81583139:G>T Detail (hg19) (IL16)

Information

Genome

Assembly Position
hg19 chr15:81,583,139-81,583,139
hg38 chr15:81,290,798-81,290,798 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_172217.3:c.1561+258G>T
NM_001172128.1:c.1420+258G>T
Ensemble ENST00000683961.1:c.1420+258G>T
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.421
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 603035 OMIM
HGNC 5980 HGNC
Ensembl ENSG00000172349 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv53723214 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Carcinoma of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
0.044 Malignant neoplasm of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
<0.001 Carcinoma of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
0.005 Carcinoma of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
0.008 Malignant neoplasm of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
0.005 Malignant neoplasm of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
<0.001 Carcinoma of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
0.010 Malignant neoplasm of lung CART analyses did not yield a tree structure for overall survival; separate CART... BeFree 25597281 Detail
Annotation

Annotations

DescrptionSourceLinks
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs7170924 dbSNP
Genome
hg19
Position
chr15:81,583,139-81,583,139
Variant Type
snv
Reference Allele
G
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs7170924
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.4215
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7064
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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